NetworkPlot( str prim = None, str kind = 'edge', str layout = 'spring' )

Displays individual agents and their network structure. In spatial models, this network can be drawn over a grid of Patches reflecting each agent’s position on the grid.

This class should not be instantiated directly. Use model.spatial() to set up a patch grid (as in the first and third images), or use Charts.addPlot(type='network') to display network structure without a patch grid (as in the second). The optional init options can be passed to that function as kwargs.

Note that patches are centered on the integer coordinates, numbering starts at 0, and agents can take fractional positions. The coordinate system for agents, therefore, runs from (-0.5, -0.5) to (x-0.5, x-0.5).

Features

• Ability to tie patch color to a property value or stocks of a good
• Ability to tie agent size to a property value or stocks of a good
• Agents can be labelled with their ID or any other property.
• Agent color reflects breed color
• Supports interactivity. Agents are clickable in any layout, and patches when visible in the patchgrid layout. Clicked agents and patches are passed to a agentClick and patchClick hook, respectively.
• The network layout can be set when registering the plot, or cycle through various layouts (including the patch grid layout, if applicable) by pressing ‘l’.

Initialization Parameters

• prim — str, optional

  Whether to limit the agent display to a particular agent primitive.

  Default value: None

• kind — str, optional

  The name of the network to display. Corresponds to the kind argument of Agent.addEdge().

  Default value: 'edge'

• layout — str, optional

  The Networkx layout class to use. Possible values are 'spring', 'circular', 'kamada_kawai', 'random', 'shell', 'spectral', and 'spiral'. See the NetworkX documentation for details on each of these.

  Default value: 'spring'

Methods

Click a method name for more detailed documentation.

• active( val, updateGUI )

  Turns on or off the selected state of a plot in the control panel.

• config( param, val )

  Sets options for the spatial plot. One argument will return the value; two arguments sets the parameter. Config options are:

  • patchColormap (str): The name of a Matplotlib colormap for coloring the patches. Default: 'blues'
  • patchProperty (str): The name of a property to which the colormap should correspond. For example, The default value of 'mapcolor' for example means that patch color will represent the patch's value of Patch.mapcolor, which can be set in the patchStep hook. If the string is formatted 'good:goodname', patch colors will represent the patch's stocks of the good represented by goodname. If this parameter is left unset, the patch map will remain white. Default: None
  • patchAspect (num): The aspect ratio of the patches. >1 is taller, <1 is wider. Note that this doesn't affect the coordinates; only the display of the map, and only in the patchGrid layout. Default: 1
  • agentMarker (str): a string representing the Matplotlib marker to be used to represent agents on the map. Default: 'o'
  • agentSize (int|str): If an integer, sets the size of the marker used to represent agents. If a string, represents an agent property or the stocks of a good to size the agent by, identically to patchProperty. Default: 5
  • agentLabel (bool|str): If False, agents are drawn with no text label. If True, agents are drawn labelled with agent.id. If a string, corresponds to the name of an agent property that should be used for the label. The value of a stock of goods can be used for the label by prefixing the string like 'good:goodname', similar to the patchProperty parameter. Default: False
  • labelSize (num), labelColor (str), labelFamily (str), labelWeight (str), labelAlpha (num), labelAlign (str), and labelVerticalAlign (str): Various paramters to control the appearance of the labels. These parameters are passed to networkx.draw_network_labels() if agentLabel != False. Default: 10, 'k', 'sans-serif', 'normal', None, 'center', and 'center'
  • lockLayout (bool): If True, disables rotating the network layout. Default: False

• draw( t, forceUpdate )

  Updates the axes object for display on the visualizer. This function is called after ChartPlot.update() when the visualizer receives new data, and when scrubbing the time bar. The update() method, therefore, should be used to store model data by time, which can then be used by draw().

  Charts will refresh the entire canvas after updating each of the individual plots, so there is no need to refresh the canvas manually here unless it is desired to redraw the graph out of sync (e.g. if the subclass provides for interactivity and the plot should update while the model is paused).

  Subclasses should call super().draw(t, forceUpdate) at the end of the function.

• MPLEvent( event )

  An event handling method that can be overridden in subclasses to catch pick (pick_event), keypress (key_press_event), and mouse click (button_press_event) events that occur inside a particular plot. This is distinct from functions passed to MPLVisualization.addKeypress(), as those will run for keys pressed any time the visualization window is in focus, regardless of the mouse position.

  For example, pressing 'l' with the mouse over a NetworkPlot will rotate the network layout. The key pressed can be accessed with event.key.

  This function should not be called by user code, but it may be defined in subclasses of ChartPlot. event.canvas.draw_idle() should be called at the end if the plot needs to be refreshed following the event. See the Matplotlib events documentation for more on interacting with the event object.

• rotateLayout( )

  Rotates the layout of the Network plot among the several NetworkX layout classes ('spring', 'circular', 'kamada_kawai', 'random', 'shell', 'spectral', and 'spiral'). This function is called when pressing 'l' with the mouse over the plot. See the NetworkX documentation for details on each of these.

• update( data, t )

  Receives current model data and stores it for future scrubbing.

  Note that this function is called when the visualizer receives new data from the model. Because ChartPlot.draw() is called both after ChartPlot.update() and when the time bar is scrubbed, drawing code should be but in ChartPlot.draw() and not here, unless there is code to be run only in the event of new data that should not be run when scrubbing (e.g. calculating new plot bounds).

  If the visualizer needs model properties besides the current data, the model object can be accessed with self.viz.model.

  This function should not typically be called from user code, though it can be for out-of-sync plot updates when interacting with a plot. See the agentClick hook for an example.

• getPatchParamValue( patch, t )

  Helper function that gathers historical patch data for use in color generation.

• launch( axes )

  Initial code to set up ChartPlot.axes when Charts launches the visualization window. Subclasses should call super().launch() at the beginning of the method. This function should not be called from user code.

• patchData( t )

  Helper function that gathers historical patch data.

Properties

• type — str

  A short identifying string, to be used in the type argument of Charts.addPlot().

• name — str

  A short name, used to refer back to the plot afterward.

• label — str

  The title of the chart, displayed above it in the visualizer.

• axes — matplotlib.AxesSubplot

  The AxesSubplot object to be drawn to the plot area. The object is created on Charts.launch() and passed to ChartPlot.launch(), where it must be stored subsequently.

• projection — str

  The Matplotlib coordinate projection to use. None defaults to 'rectilinear', but other projections available by default are 'polar', '3d', 'aitoff', 'hammer', 'lambert', and 'mollweide'. Custom Matplotlib projection objects can also be passed to this argument.

  Initial value: None

• viz — Charts

  The parent Charts visualizer object.

• selected — bool

  Whether the plot is currently queued for display. Do not modify this property directly; use ChartPlot.active() to ensure consistency with the GUI state.

• prim — str

  Whether the agent display is limited to a particular agent primitive.

  Initial value:

• params — dict{str: str|num}

  A dict of option values for the plot. See NetworkPlot.config() for options.

• kind — str

  The name of the network being displayed. Corresponds to the kind argument of Agent.addEdge().

  Initial value:

• ndata — dict{int: networkx.DiGraph}

  A dict keyed by model time, containing historical model data.

  Initial value: {}

• layout — str

  The current Networkx layout class being used. Possible values are 'spring', 'circular', 'kamada_kawai', 'random', 'shell', 'spectral', 'spiral', and 'patchgrid', the last of which corresponds to a patch grid model. See the NetworkX documentation for details on each of these but the last. Note that 'kamada_kawai' requires SciPy, and will be skipped in the layout rotation if it is not installed.

Hooks

Click a hook name for more detailed documentation.

• patchClick( patch, plot, t )

  Receives the patch clicked when the NetworkPlot plot is clicked in the patchgrid layout.

• agentClick( agents, plot, t )

  Runs when an agent is clicked in the NetworkPlot plot.